J3_4V4T_020

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GUUG*CUAAC*GGACAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|G|2090
4V4T|1|BA|U|2091
4V4T|1|BA|U|2092
4V4T|1|BA|G|2093
*
4V4T|1|BA|C|2196
4V4T|1|BA|U|2197
4V4T|1|BA|A|2198
4V4T|1|BA|A|2199
4V4T|1|BA|C|2205
*
4V4T|1|BA|G|2219
4V4T|1|BA|G|2224
4V4T|1|BA|A|2225
4V4T|1|BA|C|2226
4V4T|1|BA|A|2227
4V4T|1|BA|G|2228
4V4T|1|BA|C|2229

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L31

Chain BD

50S ribosomal protein L2

Chain BI

50S ribosomal protein L9