J3_4V4T_022

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

CCUCAG*CGGAGAGC*GUAGAAGG

Length

22 nucleotides

Bulged bases

4V4T|1|BA|G|2319, 4V4T|1|BA|G|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|C|2294
4V4T|1|BA|C|2295
4V4T|1|BA|U|2296
4V4T|1|BA|C|2297
4V4T|1|BA|A|2298
4V4T|1|BA|G|2299
*
4V4T|1|BA|C|2317
4V4T|1|BA|G|2318
4V4T|1|BA|G|2319
4V4T|1|BA|A|2320
4V4T|1|BA|G|2321
4V4T|1|BA|A|2322
4V4T|1|BA|G|2323
4V4T|1|BA|C|2324
*
4V4T|1|BA|G|2331
4V4T|1|BA|U|2332
4V4T|1|BA|A|2333
4V4T|1|BA|G|2334
4V4T|1|BA|A|2335
4V4T|1|BA|A|2336
4V4T|1|BA|G|2337
4V4T|1|BA|G|2338

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B0

50S ribosomal protein L27

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S ribosomal protein L5

Chain BS

50S ribosomal protein L18