J3_4V4T_038

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GAC*GCCAGAAG*CGUGGUGGGGAAGCCCGUACGGGUGACAACC

Length

42 nucleotides

Bulged bases

4V4T|1|BA|A|444|||A, 4V4T|1|BA|A|1472, 4V4T|1|BA|A|1536, 4V4T|1|BA|C|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|G|1444
4V4T|1|BA|A|444|||A
4V4T|1|BA|C|1445
*
4V4T|1|BA|G|1466
4V4T|1|BA|C|1467
4V4T|1|BA|C|1468
4V4T|1|BA|A|1469
4V4T|1|BA|G|1470
4V4T|1|BA|A|1471
4V4T|1|BA|A|1472
4V4T|1|BA|G|1473
*
4V4T|1|BA|C|1518
4V4T|1|BA|G|1519
4V4T|1|BA|U|1520
4V4T|1|BA|G|1521
4V4T|1|BA|G|1522
4V4T|1|BA|U|1523
4V4T|1|BA|G|1524
4V4T|1|BA|G|1525
4V4T|1|BA|G|1526
4V4T|1|BA|G|1527
4V4T|1|BA|A|1528
4V4T|1|BA|A|1529
4V4T|1|BA|G|1530
4V4T|1|BA|C|1531
4V4T|1|BA|C|1532
4V4T|1|BA|C|1533
4V4T|1|BA|G|1534
4V4T|1|BA|U|1535
4V4T|1|BA|A|1536
4V4T|1|BA|C|1537
4V4T|1|BA|G|1538
4V4T|1|BA|G|1539
4V4T|1|BA|G|1540
4V4T|1|BA|U|1541
4V4T|1|BA|G|1542
4V4T|1|BA|A|1543
4V4T|1|BA|C|1544
4V4T|1|BA|A|1545
4V4T|1|BA|A|545|||A
4V4T|1|BA|C|1546
4V4T|1|BA|C|1547

Current chains

Chain BA

23S ribosomal RNA

Nearby chains