J3_4V4X_028

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V4X|1|BA|G|500, 4V4X|1|BA|U|504, 4V4X|1|BA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4X|1|BA|G|30
4V4X|1|BA|C|31
*
4V4X|1|BA|G|474
4V4X|1|BA|U|475
4V4X|1|BA|G|476
4V4X|1|BA|A|477
4V4X|1|BA|A|478
4V4X|1|BA|A|479
4V4X|1|BA|A|480
4V4X|1|BA|G|481
4V4X|1|BA|A|482
4V4X|1|BA|A|483
4V4X|1|BA|C|484
*
4V4X|1|BA|G|496
4V4X|1|BA|A|497
4V4X|1|BA|G|498
4V4X|1|BA|U|499
4V4X|1|BA|G|500
4V4X|1|BA|A|501
4V4X|1|BA|A|502
4V4X|1|BA|A|503
4V4X|1|BA|U|504
4V4X|1|BA|A|505
4V4X|1|BA|G|506
4V4X|1|BA|A|507
4V4X|1|BA|G|508
4V4X|1|BA|C|509
4V4X|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BT

50S ribosomal protein L20

Chain BV

50S ribosomal protein L22

Chain BW

50S ribosomal protein L23

Chain BX

50S ribosomal protein L24