J3_4V4Y_001

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Y_001 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.232

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V4Y|1|AA|G|46
4V4Y|1|AA|C|47
*
4V4Y|1|AA|G|361
4V4Y|1|AA|G|362
4V4Y|1|AA|A|363
4V4Y|1|AA|A|364
4V4Y|1|AA|U|365
4V4Y|1|AA|C|366
4V4Y|1|AA|U|367
*
4V4Y|1|AA|A|393
4V4Y|1|AA|G|394
4V4Y|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S12

Chain AS

30S ribosomal protein S16