J3_4V4Y_007
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4V4Y|1|AA|A|975, 4V4Y|1|AA|G|976, 4V4Y|1|AA|G|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4Y_007 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.2492
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V4Y|1|AA|U|955
4V4Y|1|AA|U|956
4V4Y|1|AA|U|957
4V4Y|1|AA|A|958
4V4Y|1|AA|A|959
4V4Y|1|AA|U|960
4V4Y|1|AA|U|961
4V4Y|1|AA|C|962
*
4V4Y|1|AA|G|973
4V4Y|1|AA|A|974
4V4Y|1|AA|A|975
4V4Y|1|AA|G|976
4V4Y|1|AA|A|977
4V4Y|1|AA|A|978
4V4Y|1|AA|C|979
4V4Y|1|AA|C|980
4V4Y|1|AA|U|981
4V4Y|1|AA|U|982
4V4Y|1|AA|A|983
4V4Y|1|AA|C|984
*
4V4Y|1|AA|G|1221
4V4Y|1|AA|G|1222
4V4Y|1|AA|C|1223
4V4Y|1|AA|G|1224
4V4Y|1|AA|A|1225
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AB
- Transfer RNA; tRNA
- Chain AM
- 30S ribosomal protein S10
- Chain AP
- 30S ribosomal protein S13
- Chain AQ
- 30S ribosomal protein S14
- Chain AV
- 30S ribosomal protein S19
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