J3_4V4Y_010

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUCAG*CGCAACC*GACGAC

Length

18 nucleotides

Bulged bases

4V4Y|1|AA|G|1190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|AA|G|1064
4V4Y|1|AA|U|1065
4V4Y|1|AA|C|1066
4V4Y|1|AA|A|1067
4V4Y|1|AA|G|1068
*
4V4Y|1|AA|C|1107
4V4Y|1|AA|G|1108
4V4Y|1|AA|C|1109
4V4Y|1|AA|A|1110
4V4Y|1|AA|A|1111
4V4Y|1|AA|C|1112
4V4Y|1|AA|C|1113
*
4V4Y|1|AA|G|1187
4V4Y|1|AA|A|1188
4V4Y|1|AA|C|1189
4V4Y|1|AA|G|1190
4V4Y|1|AA|A|1191
4V4Y|1|AA|C|1192

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S ribosomal protein S3

Chain AH

30S ribosomal protein S5

Chain AL

30S ribosomal protein S9

Chain AM

30S ribosomal protein S10

Chain AQ

30S ribosomal protein S14