J3_4V4Y_015

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGAGC*GGA*UAACCGAG

Length

16 nucleotides

Bulged bases

4V4Y|1|BA|A|685, 4V4Y|1|BA|A|789, 4V4Y|1|BA|C|790, 4V4Y|1|BA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|C|683
4V4Y|1|BA|G|684
4V4Y|1|BA|A|685
4V4Y|1|BA|G|686
4V4Y|1|BA|C|687
*
4V4Y|1|BA|G|775
4V4Y|1|BA|G|776
4V4Y|1|BA|A|777
*
4V4Y|1|BA|U|787
4V4Y|1|BA|A|788
4V4Y|1|BA|A|789
4V4Y|1|BA|C|790
4V4Y|1|BA|C|791
4V4Y|1|BA|G|792
4V4Y|1|BA|A|793
4V4Y|1|BA|G|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2

Chain BF

50S ribosomal protein L4

Chain BV

50S ribosomal protein L22