J3_4V4Z_016

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGAGC*GGA*UAACCGAG

Length

16 nucleotides

Bulged bases

4V4Z|1|BA|A|685, 4V4Z|1|BA|A|789, 4V4Z|1|BA|C|790, 4V4Z|1|BA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|BA|C|683
4V4Z|1|BA|G|684
4V4Z|1|BA|A|685
4V4Z|1|BA|G|686
4V4Z|1|BA|C|687
*
4V4Z|1|BA|G|775
4V4Z|1|BA|G|776
4V4Z|1|BA|A|777
*
4V4Z|1|BA|U|787
4V4Z|1|BA|A|788
4V4Z|1|BA|A|789
4V4Z|1|BA|C|790
4V4Z|1|BA|C|791
4V4Z|1|BA|G|792
4V4Z|1|BA|A|793
4V4Z|1|BA|G|794

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BD

50S RIBOSOMAL PROTEIN L2

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BV

50S RIBOSOMAL PROTEIN L22