J3_4V4Z_031

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGAAG*CGCC*GAGGGUGAAAGCCCCGUAG

Length

28 nucleotides

Bulged bases

4V4Z|1|BA|U|328, 4V4Z|1|BA|G|329, 4V4Z|1|BA|A|330, 4V4Z|1|BA|A|331, 4V4Z|1|BA|G|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|BA|C|297
4V4Z|1|BA|G|298
4V4Z|1|BA|A|299
4V4Z|1|BA|A|300
4V4Z|1|BA|G|301
*
4V4Z|1|BA|C|316
4V4Z|1|BA|G|317
4V4Z|1|BA|C|318
4V4Z|1|BA|C|319
*
4V4Z|1|BA|G|323
4V4Z|1|BA|A|324
4V4Z|1|BA|G|325
4V4Z|1|BA|G|326
4V4Z|1|BA|G|327
4V4Z|1|BA|U|328
4V4Z|1|BA|G|329
4V4Z|1|BA|A|330
4V4Z|1|BA|A|331
4V4Z|1|BA|A|332
4V4Z|1|BA|G|333
4V4Z|1|BA|C|334
4V4Z|1|BA|C|335
4V4Z|1|BA|C|336
4V4Z|1|BA|C|337
4V4Z|1|BA|G|338
4V4Z|1|BA|U|339
4V4Z|1|BA|A|340
4V4Z|1|BA|G|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BX

50S RIBOSOMAL PROTEIN L24