J3_4V50_042

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

4V50|1|DB|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V50_042 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0815

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V50|1|DB|A|56
4V50|1|DB|C|57
*
4V50|1|DB|G|70
4V50|1|DB|A|71
4V50|1|DB|U|72
4V50|1|DB|A|73
4V50|1|DB|A|74
4V50|1|DB|G|75
4V50|1|DB|C|76
*
4V50|1|DB|G|110
4V50|1|DB|A|111
4V50|1|DB|U|112
4V50|1|DB|U|113
4V50|1|DB|U|114

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23

Chain DY

50S ribosomal protein L29