J3_4V50_043

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V50|1|DB|U|686, 4V50|1|DB|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V50_043 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0618

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V50|1|DB|U|683
4V50|1|DB|G|684
4V50|1|DB|A|685
4V50|1|DB|U|686
4V50|1|DB|C|687
4V50|1|DB|U|688
4V50|1|DB|A|689
*
4V50|1|DB|U|773
4V50|1|DB|G|774
4V50|1|DB|G|775
*
4V50|1|DB|C|791
4V50|1|DB|A|792
4V50|1|DB|A|793
4V50|1|DB|A|794

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2

Chain DE

50S ribosomal protein L4