J3_4V50_045

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V50_045 not in the Motif Atlas

Homologous match to J3_7RQB_006

Geometric discrepancy: 0.4831

The information below is about J3_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V50|1|DB|G|1055
4V50|1|DB|G|1056
4V50|1|DB|A|1057
*
4V50|1|DB|U|1081
4V50|1|DB|U|1082
4V50|1|DB|U|1083
4V50|1|DB|A|1084
4V50|1|DB|A|1085
4V50|1|DB|A|1086
4V50|1|DB|G|1087
*
4V50|1|DB|C|1102
4V50|1|DB|A|1103
4V50|1|DB|C|1104

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DI

50S ribosomal protein L11