J3_4V51_005

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V51_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0873

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V51|1|AA|C|936
4V51|1|AA|A|937
4V51|1|AA|A|938
4V51|1|AA|G|939
*
4V51|1|AA|C|1344
4V51|1|AA|U|1345
4V51|1|AA|A|1346
4V51|1|AA|G|1347
4V51|1|AA|U|1348
4V51|1|AA|A|1349
4V51|1|AA|A|1350
*
4V51|1|AA|U|1372
4V51|1|AA|G|1373
4V51|1|AA|A|1374
4V51|1|AA|A|1375
4V51|1|AA|U|1376
4V51|1|AA|A|1377
4V51|1|AA|C|1378
4V51|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AW

Transfer RNA; tRNA