3D structure

PDB id
4V51 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4V51|1|CA|A|975, 4V51|1|CA|G|976, 4V51|1|CA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V51_032 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0809
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V51|1|CA|U|955
4V51|1|CA|U|956
4V51|1|CA|U|957
4V51|1|CA|A|958
4V51|1|CA|A|959
4V51|1|CA|U|960
4V51|1|CA|U|961
4V51|1|CA|C|962
*
4V51|1|CA|G|973
4V51|1|CA|A|974
4V51|1|CA|A|975
4V51|1|CA|G|976
4V51|1|CA|A|977
4V51|1|CA|A|978
4V51|1|CA|C|979
4V51|1|CA|C|980
4V51|1|CA|U|981
4V51|1|CA|U|982
4V51|1|CA|A|983
4V51|1|CA|C|984
*
4V51|1|CA|G|1221
4V51|1|CA|G|1222
4V51|1|CA|C|1223
4V51|1|CA|G|1224
4V51|1|CA|A|1225

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CJ
30S RIBOSOMAL PROTEIN S10
Chain CM
30S RIBOSOMAL PROTEIN S13
Chain CN
30S RIBOSOMAL PROTEIN S14
Chain CS
30S RIBOSOMAL PROTEIN S19
Chain CY
Transfer RNA; tRNA

Coloring options:


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