J3_4V52_018

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V52_018 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0668

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V52|1|BB|C|698
4V52|1|BB|A|699
4V52|1|BB|G|700
*
4V52|1|BB|C|732
4V52|1|BB|G|733
4V52|1|BB|A|734
4V52|1|BB|A|735
4V52|1|BB|C|736
*
4V52|1|BB|G|760
4V52|1|BB|A|761
4V52|1|BB|U|762
4V52|1|BB|G|763

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2