J3_4V52_062
3D structure
- PDB id
- 4V52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.21 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V52|1|BB|A|2388, 4V52|1|BB|U|2390, 4V52|1|BB|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V52_062 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0717
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V52|1|BB|G|2282
4V52|1|BB|C|2283
4V52|1|BB|A|2284
*
4V52|1|BB|U|2384
4V52|1|BB|C|2385
4V52|1|BB|A|2386
4V52|1|BB|U|2387
4V52|1|BB|A|2388
4V52|1|BB|G|2389
4V52|1|BB|U|2390
4V52|1|BB|G|2391
4V52|1|BB|A|2392
4V52|1|BB|U|2393
4V52|1|BB|C|2394
4V52|1|BB|C|2395
*
4V52|1|BB|G|2421
4V52|1|BB|C|2422
4V52|1|BB|U|2423
4V52|1|BB|C|2424
4V52|1|BB|A|2425
4V52|1|BB|A|2426
4V52|1|BB|C|2427
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain B1
- 50S ribosomal protein L33
- Chain B3
- 50S ribosomal protein L35
- Chain BL
- 50S ribosomal protein L15
- Chain BW
- 50S ribosomal protein L27
Coloring options: