J3_4V53_002

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_002 not in the Motif Atlas

Homologous match to J3_5J7L_002

Geometric discrepancy: 0.1361

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V53|1|AA|C|586
4V53|1|AA|G|587
4V53|1|AA|G|588
*
4V53|1|AA|C|651
4V53|1|AA|U|652
4V53|1|AA|U|653
4V53|1|AA|G|654
*
4V53|1|AA|C|754
4V53|1|AA|G|755

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AL

30S ribosomal protein S12

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17