J3_4V53_005

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0716

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V53|1|AA|C|936
4V53|1|AA|A|937
4V53|1|AA|A|938
4V53|1|AA|G|939
*
4V53|1|AA|C|1344
4V53|1|AA|U|1345
4V53|1|AA|A|1346
4V53|1|AA|G|1347
4V53|1|AA|U|1348
4V53|1|AA|A|1349
4V53|1|AA|A|1350
*
4V53|1|AA|U|1372
4V53|1|AA|G|1373
4V53|1|AA|A|1374
4V53|1|AA|A|1375
4V53|1|AA|U|1376
4V53|1|AA|A|1377
4V53|1|AA|C|1378
4V53|1|AA|G|1379

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9