J3_4V53_018

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_018 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0796

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V53|1|BB|C|698
4V53|1|BB|A|699
4V53|1|BB|G|700
*
4V53|1|BB|C|732
4V53|1|BB|G|733
4V53|1|BB|A|734
4V53|1|BB|A|735
4V53|1|BB|C|736
*
4V53|1|BB|G|760
4V53|1|BB|A|761
4V53|1|BB|U|762
4V53|1|BB|G|763

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2