J3_4V53_024

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4V53|1|BB|A|2518, 4V53|1|BB|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_024 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0768

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V53|1|BB|C|2517
4V53|1|BB|A|2518
4V53|1|BB|U|2519
4V53|1|BB|C|2520
*
4V53|1|BB|G|2545
4V53|1|BB|U|2546
4V53|1|BB|A|2547
*
4V53|1|BB|U|2561
4V53|1|BB|U|2562
4V53|1|BB|U|2563
4V53|1|BB|A|2564
4V53|1|BB|A|2565
4V53|1|BB|A|2566
4V53|1|BB|G|2567

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14