J3_4V53_025

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUG*CC*GAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_025 not in the Motif Atlas

Homologous match to J3_5J7L_047

Geometric discrepancy: 0.157

The information below is about J3_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30104.1

Basepair signature

cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V53|1|BB|C|2789
4V53|1|BB|U|2790
4V53|1|BB|G|2791
*
4V53|1|BB|C|2805
4V53|1|BB|C|2806
*
4V53|1|BB|G|2892
4V53|1|BB|A|2893
4V53|1|BB|G|2894

Current chains

Chain BB

23S rRNA

Nearby chains