J3_4V53_027

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_027 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.0847

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V53|1|CA|G|46
4V53|1|CA|C|47
*
4V53|1|CA|G|361
4V53|1|CA|G|362
4V53|1|CA|A|363
4V53|1|CA|A|364
4V53|1|CA|U|365
4V53|1|CA|A|366
4V53|1|CA|U|367
*
4V53|1|CA|A|393
4V53|1|CA|G|394
4V53|1|CA|C|395

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16