J3_4V53_032

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_032 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1121

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V53|1|CA|U|943
4V53|1|CA|G|944
4V53|1|CA|G|945
4V53|1|CA|A|946
*
4V53|1|CA|U|1235
4V53|1|CA|A|1236
4V53|1|CA|C|1237
*
4V53|1|CA|G|1337
4V53|1|CA|G|1338
4V53|1|CA|A|1339
4V53|1|CA|A|1340

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13