J3_4V53_037

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_037 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1658

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V53|1|CA|U|1073
4V53|1|CA|G|1074
*
4V53|1|CA|U|1083
4V53|1|CA|G|1084
4V53|1|CA|U|1085
4V53|1|CA|U|1086
4V53|1|CA|G|1087
*
4V53|1|CA|C|1098
4V53|1|CA|G|1099
4V53|1|CA|C|1100
4V53|1|CA|A|1101
4V53|1|CA|A|1102

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CE

30S ribosomal protein S5