J3_4V53_040

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

4V53|1|DA|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_040 not in the Motif Atlas

Homologous match to J3_5J7L_049

Geometric discrepancy: 0.5485

The information below is about J3_5J7L_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89095.1

Basepair signature

cWW-F-F-F-tHS-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

4V53|1|DA|G|10
4V53|1|DA|C|11
4V53|1|DA|C|12
4V53|1|DA|G|13
4V53|1|DA|U|14
4V53|1|DA|A|15
4V53|1|DA|G|16
*
4V53|1|DA|C|68
4V53|1|DA|G|69
4V53|1|DA|C|70
*
4V53|1|DA|G|106
4V53|1|DA|G|107
4V53|1|DA|A|108
4V53|1|DA|A|109
4V53|1|DA|C|110

Current chains

Chain DA

5S rRNA

Nearby chains

Chain DB

Large subunit ribosomal RNA; LSU rRNA

Chain DO

50S ribosomal protein L18

Chain DW

50S ribosomal protein L27