J3_4V53_043

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V53|1|DB|U|686, 4V53|1|DB|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_043 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.072

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V53|1|DB|U|683
4V53|1|DB|G|684
4V53|1|DB|A|685
4V53|1|DB|U|686
4V53|1|DB|C|687
4V53|1|DB|U|688
4V53|1|DB|A|689
*
4V53|1|DB|U|773
4V53|1|DB|G|774
4V53|1|DB|G|775
*
4V53|1|DB|C|791
4V53|1|DB|A|792
4V53|1|DB|A|793
4V53|1|DB|A|794

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2

Chain DE

50S ribosomal protein L4