J3_4V53_055

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V53|1|AA|U|1212, 4V53|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_055 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1355

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V53|1|AA|C|990
4V53|1|AA|U|991
4V53|1|AA|U|992
4V53|1|AA|G|993
4V53|1|AA|A|994
4V53|1|AA|C|995
4V53|1|AA|A|996
4V53|1|AA|U|997
*
4V53|1|AA|A|1044
4V53|1|AA|C|1045
4V53|1|AA|A|1046
4V53|1|AA|G|1047
*
4V53|1|AA|C|1210
4V53|1|AA|U|1211
4V53|1|AA|U|1212
4V53|1|AA|A|1213
4V53|1|AA|C|1214
4V53|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14