J3_4V57_008

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases (A, C, G, U)

1212U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V57_008 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1555

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V57|1|AA|C|990
4V57|1|AA|U|991
4V57|1|AA|U|992
4V57|1|AA|G|993
*
4V57|1|AA|C|1045
4V57|1|AA|A|1046
4V57|1|AA|G|1047
*
4V57|1|AA|C|1210
4V57|1|AA|U|1211
4V57|1|AA|U|1212
4V57|1|AA|A|1213
4V57|1|AA|C|1214
4V57|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14