3D structure

PDB id
4V57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
4V57|1|CA|A|975, 4V57|1|CA|G|976, 4V57|1|CA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V57_032 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.1277
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V57|1|CA|U|955
4V57|1|CA|U|956
4V57|1|CA|U|957
4V57|1|CA|A|958
4V57|1|CA|A|959
4V57|1|CA|U|960
4V57|1|CA|U|961
4V57|1|CA|C|962
*
4V57|1|CA|G|973
4V57|1|CA|A|974
4V57|1|CA|A|975
4V57|1|CA|G|976
4V57|1|CA|A|977
4V57|1|CA|A|978
4V57|1|CA|C|979
4V57|1|CA|C|980
4V57|1|CA|U|981
4V57|1|CA|U|982
4V57|1|CA|A|983
4V57|1|CA|C|984
*
4V57|1|CA|G|1221
4V57|1|CA|G|1222
4V57|1|CA|C|1223
4V57|1|CA|U|1224
4V57|1|CA|A|1225

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CJ
30S ribosomal protein S10
Chain CM
30S ribosomal protein S13
Chain CN
30S ribosomal protein S14
Chain CS
30S ribosomal protein S19

Coloring options:


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