J3_4V57_043

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V57_043 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0702

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V57|1|DB|C|698
4V57|1|DB|A|699
4V57|1|DB|G|700
*
4V57|1|DB|C|732
4V57|1|DB|G|733
4V57|1|DB|A|734
4V57|1|DB|A|735
4V57|1|DB|C|736
*
4V57|1|DB|G|760
4V57|1|DB|A|761
4V57|1|DB|U|762
4V57|1|DB|G|763

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2