J3_4V57_050

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CC*GAG

Length

8 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V57_050 not in the Motif Atlas

Homologous match to J3_5J7L_047

Geometric discrepancy: 0.186

The information below is about J3_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30104.1

Basepair signature

cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V57|1|DB|C|2789
4V57|1|DB|U|2790
4V57|1|DB|G|2791
*
4V57|1|DB|C|2805
4V57|1|DB|C|2806
*
4V57|1|DB|G|2892
4V57|1|DB|A|2893
4V57|1|DB|G|2894

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22