J3_4V5C_015

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V5C|1|BA|G|686, 4V5C|1|BA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5C_015 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0942

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5C|1|BA|C|683
4V5C|1|BA|G|684
4V5C|1|BA|A|685
4V5C|1|BA|G|686
4V5C|1|BA|C|687
4V5C|1|BA|U|688
4V5C|1|BA|A|689
*
4V5C|1|BA|U|773
4V5C|1|BA|A|774
4V5C|1|BA|G|775
*
4V5C|1|BA|C|791
4V5C|1|BA|G|792
4V5C|1|BA|A|793
4V5C|1|BA|G|794

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BD

50S RIBOSOMAL PROTEIN L2