J3_4V5C_018

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V5C|1|BA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5C_018 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0649

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V5C|1|BA|C|1306
4V5C|1|BA|A|1307
4V5C|1|BA|A|1308
4V5C|1|BA|G|1309
*
4V5C|1|BA|C|1605
4V5C|1|BA|G|1606
4V5C|1|BA|C|1607
4V5C|1|BA|A|1608
4V5C|1|BA|A|1609
4V5C|1|BA|A|1610
4V5C|1|BA|C|1611
*
4V5C|1|BA|G|1620
4V5C|1|BA|U|1621
4V5C|1|BA|G|1622

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34