J3_4V5C_025

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5C_025 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1282

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5C|1|CA|G|46
4V5C|1|CA|C|47
*
4V5C|1|CA|G|361
4V5C|1|CA|G|362
4V5C|1|CA|A|363
4V5C|1|CA|A|364
4V5C|1|CA|U|365
4V5C|1|CA|C|366
4V5C|1|CA|U|367
*
4V5C|1|CA|A|393
4V5C|1|CA|G|394
4V5C|1|CA|C|395

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CP

30S RIBOSOMAL PROTEIN S16