J3_4V5C_026

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5C_026 not in the Motif Atlas

Homologous match to J3_5J7L_002

Geometric discrepancy: 0.121

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V5C|1|CA|C|586
4V5C|1|CA|G|587
4V5C|1|CA|G|588
*
4V5C|1|CA|C|651
4V5C|1|CA|U|652
4V5C|1|CA|A|653
4V5C|1|CA|G|654
*
4V5C|1|CA|C|754
4V5C|1|CA|G|755

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CH

30S RIBOSOMAL PROTEIN S8

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CO

30S RIBOSOMAL PROTEIN S15

Chain CQ

30S RIBOSOMAL PROTEIN S17