J3_4V5C_053
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUAGCUCAGUCGGUAGAGCAGGG*CCCGUGUCCUUG*CGAGUC
- Length
- 42 nucleotides
- Bulged bases
- 4V5C|1|AY|U|16, 4V5C|1|AY|C|17, 4V5C|1|AY|G|18, 4V5C|1|AY|G|19, 4V5C|1|AY|U|20, 4V5C|1|AY|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5C|1|AY|G|6
4V5C|1|AY|A|7
4V5C|1|AY|U|8
4V5C|1|AY|A|9
4V5C|1|AY|G|10
4V5C|1|AY|C|11
4V5C|1|AY|U|12
4V5C|1|AY|C|13
4V5C|1|AY|A|14
4V5C|1|AY|G|15
4V5C|1|AY|U|16
4V5C|1|AY|C|17
4V5C|1|AY|G|18
4V5C|1|AY|G|19
4V5C|1|AY|U|20
4V5C|1|AY|A|21
4V5C|1|AY|G|22
4V5C|1|AY|A|23
4V5C|1|AY|G|24
4V5C|1|AY|C|25
4V5C|1|AY|A|26
4V5C|1|AY|G|27
4V5C|1|AY|G|28
4V5C|1|AY|G|29
*
4V5C|1|AY|C|41
4V5C|1|AY|C|42
4V5C|1|AY|C|43
4V5C|1|AY|G|44
4V5C|1|AY|U|45
4V5C|1|AY|G|46
4V5C|1|AY|U|47
4V5C|1|AY|C|48
4V5C|1|AY|C|49
4V5C|1|AY|U|50
4V5C|1|AY|U|51
4V5C|1|AY|G|52
*
4V5C|1|AY|C|62
4V5C|1|AY|G|63
4V5C|1|AY|A|64
4V5C|1|AY|G|65
4V5C|1|AY|U|66
4V5C|1|AY|C|67
Current chains
- Chain AY
- A-SITE PHE-TRNA PHE
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AV
- Transfer RNA; tRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: