Loop J3_4V5C

3D structure

PDB id: 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: GGAUAGCUCAGUCGGUAGAGCAGGG*CCCGUGUCCUU*GAGUCC
Length: 42 nucleotides
Bulged bases: 4V5C|1|CY|C|17, 4V5C|1|CY|G|18, 4V5C|1|CY|U|20, 4V5C|1|CY|U|47, 4V5C|1|CY|U|50
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5C|1|CY|G|5
4V5C|1|CY|G|6
4V5C|1|CY|A|7
4V5C|1|CY|U|8
4V5C|1|CY|A|9
4V5C|1|CY|G|10
4V5C|1|CY|C|11
4V5C|1|CY|U|12
4V5C|1|CY|C|13
4V5C|1|CY|A|14
4V5C|1|CY|G|15
4V5C|1|CY|U|16
4V5C|1|CY|C|17
4V5C|1|CY|G|18
4V5C|1|CY|G|19
4V5C|1|CY|U|20
4V5C|1|CY|A|21
4V5C|1|CY|G|22
4V5C|1|CY|A|23
4V5C|1|CY|G|24
4V5C|1|CY|C|25
4V5C|1|CY|A|26
4V5C|1|CY|G|27
4V5C|1|CY|G|28
4V5C|1|CY|G|29
*
4V5C|1|CY|C|41
4V5C|1|CY|C|42
4V5C|1|CY|C|43
4V5C|1|CY|G|44
4V5C|1|CY|U|45
4V5C|1|CY|G|46
4V5C|1|CY|U|47
4V5C|1|CY|C|48
4V5C|1|CY|C|49
4V5C|1|CY|U|50
4V5C|1|CY|U|51
*
4V5C|1|CY|G|63
4V5C|1|CY|A|64
4V5C|1|CY|G|65
4V5C|1|CY|U|66
4V5C|1|CY|C|67
4V5C|1|CY|C|68

Current chains

Chain CY: A-SITE PHE-TRNA PHE

Nearby chains

Chain CA: Small subunit ribosomal RNA; SSU rRNA
Chain CM: 30S RIBOSOMAL PROTEIN S13
Chain CV: Transfer RNA; tRNA
Chain DA: Large subunit ribosomal RNA; LSU rRNA
Chain DQ: 50S RIBOSOMAL PROTEIN L16

J3_4V5C_063