J3_4V5D_031

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUGGA*UAC*GGAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|CA|G|941
4V5D|1|CA|G|942
4V5D|1|CA|U|943
4V5D|1|CA|G|944
4V5D|1|CA|G|945
4V5D|1|CA|A|946
*
4V5D|1|CA|U|1235
4V5D|1|CA|A|1236
4V5D|1|CA|C|1237
*
4V5D|1|CA|G|1337
4V5D|1|CA|G|1338
4V5D|1|CA|A|1339
4V5D|1|CA|A|1340
4V5D|1|CA|U|1341
4V5D|1|CA|C|1342

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S7

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CU

30S RIBOSOMAL PROTEIN THX

Chain CV

Transfer RNA; tRNA

Chain CW

Transfer RNA; tRNA