J3_4V5D_035

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5D_035 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1808

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5D|1|CA|U|1073
4V5D|1|CA|G|1074
*
4V5D|1|CA|U|1083
4V5D|1|CA|G|1084
4V5D|1|CA|U|1085
4V5D|1|CA|U|1086
4V5D|1|CA|G|1087
*
4V5D|1|CA|C|1098
4V5D|1|CA|G|1099
4V5D|1|CA|C|1100
4V5D|1|CA|A|1101
4V5D|1|CA|A|1102

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CE

30S RIBOSOMAL PROTEIN S5