J3_4V5D_041

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V5D|1|DA|G|686, 4V5D|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5D_041 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0834

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5D|1|DA|C|683
4V5D|1|DA|G|684
4V5D|1|DA|A|685
4V5D|1|DA|G|686
4V5D|1|DA|C|687
4V5D|1|DA|U|688
4V5D|1|DA|A|689
*
4V5D|1|DA|U|773
4V5D|1|DA|A|774
4V5D|1|DA|G|775
*
4V5D|1|DA|C|791
4V5D|1|DA|G|792
4V5D|1|DA|A|793
4V5D|1|DA|G|794

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DD

50S RIBOSOMAL PROTEIN L2