J3_4V5D_053

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*CGCCGAUGGC*GCAG

Length

16 nucleotides

Bulged bases

4V5D|1|AA|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|AA|U|672
4V5D|1|AA|G|673
*
4V5D|1|AA|C|717
4V5D|1|AA|G|718
4V5D|1|AA|C|719
4V5D|1|AA|C|720
4V5D|1|AA|G|721
4V5D|1|AA|A|722
4V5D|1|AA|U|723
4V5D|1|AA|G|724
4V5D|1|AA|G|725
4V5D|1|AA|C|726
*
4V5D|1|AA|G|731
4V5D|1|AA|C|732
4V5D|1|AA|A|733
4V5D|1|AA|G|734

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S RIBOSOMAL PROTEIN S6

Chain AK

30S RIBOSOMAL PROTEIN S11

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain AR

30S RIBOSOMAL PROTEIN S18