J3_4V5E_051

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4V5E|1|DA|G|2833, 4V5E|1|DA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5E_051 not in the Motif Atlas

Homologous match to J3_7RQB_014

Geometric discrepancy: 0.0824

The information below is about J3_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95952.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5E|1|DA|C|2814
4V5E|1|DA|C|2815
*
4V5E|1|DA|G|2831
4V5E|1|DA|U|2832
4V5E|1|DA|G|2833
4V5E|1|DA|G|2834
4V5E|1|DA|A|2835
4V5E|1|DA|U|2836
*
4V5E|1|DA|A|2882
4V5E|1|DA|A|2883
4V5E|1|DA|U|2884
4V5E|1|DA|C|2885
4V5E|1|DA|G|2886

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D5

50S RIBOSOMAL PROTEIN L32

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DR

50S RIBOSOMAL PROTEIN L17