J3_4V5F_041

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4V5F|1|DA|U|272|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5F_041 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1025

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V5F|1|DA|U|269
4V5F|1|DA|A|270
4V5F|1|DA|A|271
4V5F|1|DA|A|271|||A
4V5F|1|DA|C|271|||B
*
4V5F|1|DA|G|271|||V
4V5F|1|DA|G|271|||W
4V5F|1|DA|G|271|||X
4V5F|1|DA|U|271|||Y
4V5F|1|DA|C|271|||Z
4V5F|1|DA|G|272
4V5F|1|DA|U|272|||A
4V5F|1|DA|G|272|||B
*
4V5F|1|DA|C|366
4V5F|1|DA|G|370

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains