J3_4V5F_056
3D structure
- PDB id
- 4V5F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the ribosome with elongation factor G trapped in the post-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGGAGCAGCCUGGUAGCUCGU*AAGGUCGUC*GGCC
- Length
- 35 nucleotides
- Bulged bases
- 4V5F|1|AW|C|16, 4V5F|1|AW|G|19, 4V5F|1|AW|G|20, 4V5F|1|AW|U|21, 4V5F|1|AW|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5F|1|AW|G|7
4V5F|1|AW|U|8
4V5F|1|AW|G|9
4V5F|1|AW|G|10
4V5F|1|AW|A|11
4V5F|1|AW|G|12
4V5F|1|AW|C|13
4V5F|1|AW|A|14
4V5F|1|AW|G|15
4V5F|1|AW|C|16
4V5F|1|AW|C|17
4V5F|1|AW|U|18
4V5F|1|AW|G|19
4V5F|1|AW|G|20
4V5F|1|AW|U|21
4V5F|1|AW|A|22
4V5F|1|AW|G|23
4V5F|1|AW|C|24
4V5F|1|AW|U|25
4V5F|1|AW|C|26
4V5F|1|AW|G|27
4V5F|1|AW|U|28
*
4V5F|1|AW|A|44
4V5F|1|AW|A|45
4V5F|1|AW|G|46
4V5F|1|AW|G|47
4V5F|1|AW|U|48
4V5F|1|AW|C|49
4V5F|1|AW|G|50
4V5F|1|AW|U|51
4V5F|1|AW|C|52
*
4V5F|1|AW|G|64
4V5F|1|AW|G|65
4V5F|1|AW|C|66
4V5F|1|AW|C|67
Current chains
- Chain AW
- E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)
Nearby chains
- Chain AG
- 30S RIBOSOMAL PROTEIN S7
- Chain AK
- 30S RIBOSOMAL PROTEIN S11
- Chain B6
- 50S RIBOSOMAL PROTEIN L33
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S RIBOSOMAL PROTEIN L1
Coloring options: