J3_4V5F_066

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUGGAGCAGCCUGGUAGCUCGU*AAGGUCGUC*GGCC

Length

35 nucleotides

Bulged bases

4V5F|1|CW|C|16, 4V5F|1|CW|C|17, 4V5F|1|CW|U|18, 4V5F|1|CW|G|19, 4V5F|1|CW|G|20, 4V5F|1|CW|U|21, 4V5F|1|CW|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5F|1|CW|G|7
4V5F|1|CW|U|8
4V5F|1|CW|G|9
4V5F|1|CW|G|10
4V5F|1|CW|A|11
4V5F|1|CW|G|12
4V5F|1|CW|C|13
4V5F|1|CW|A|14
4V5F|1|CW|G|15
4V5F|1|CW|C|16
4V5F|1|CW|C|17
4V5F|1|CW|U|18
4V5F|1|CW|G|19
4V5F|1|CW|G|20
4V5F|1|CW|U|21
4V5F|1|CW|A|22
4V5F|1|CW|G|23
4V5F|1|CW|C|24
4V5F|1|CW|U|25
4V5F|1|CW|C|26
4V5F|1|CW|G|27
4V5F|1|CW|U|28
*
4V5F|1|CW|A|44
4V5F|1|CW|A|45
4V5F|1|CW|G|46
4V5F|1|CW|G|47
4V5F|1|CW|U|48
4V5F|1|CW|C|49
4V5F|1|CW|G|50
4V5F|1|CW|U|51
4V5F|1|CW|C|52
*
4V5F|1|CW|G|64
4V5F|1|CW|G|65
4V5F|1|CW|C|66
4V5F|1|CW|C|67

Current chains

Chain CW

E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S7

Chain CK

30S RIBOSOMAL PROTEIN S11

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DC

50S RIBOSOMAL PROTEIN L1