3D structure

PDB id
4V5G (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UUUAAUUCG*CGAAGAACCUUAC*GGCGA
Length
27 nucleotides
Bulged bases
4V5G|1|CA|U|960, 4V5G|1|CA|A|975, 4V5G|1|CA|G|976, 4V5G|1|CA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5G|1|CA|U|955
4V5G|1|CA|U|956
4V5G|1|CA|U|957
4V5G|1|CA|A|958
4V5G|1|CA|A|959
4V5G|1|CA|U|960
4V5G|1|CA|U|961
4V5G|1|CA|C|962
4V5G|1|CA|G|963
*
4V5G|1|CA|C|972
4V5G|1|CA|G|973
4V5G|1|CA|A|974
4V5G|1|CA|A|975
4V5G|1|CA|G|976
4V5G|1|CA|A|977
4V5G|1|CA|A|978
4V5G|1|CA|C|979
4V5G|1|CA|C|980
4V5G|1|CA|U|981
4V5G|1|CA|U|982
4V5G|1|CA|A|983
4V5G|1|CA|C|984
*
4V5G|1|CA|G|1221
4V5G|1|CA|G|1222
4V5G|1|CA|C|1223
4V5G|1|CA|G|1224
4V5G|1|CA|A|1225

Current chains

Chain CA
16S RIBOSOMAL RNA

Nearby chains

Chain CI
30S RIBOSOMAL PROTEIN S9
Chain CJ
30S RIBOSOMAL PROTEIN S10
Chain CM
30S RIBOSOMAL PROTEIN S13
Chain CN
30S RIBOSOMAL PROTEIN S14 TYPE Z
Chain CS
30S RIBOSOMAL PROTEIN S19
Chain CY
Transfer RNA; tRNA

Coloring options:

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