J3_4V5G_089

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGGGACCUAAG*CGAAGGGCAGCC*GGCC

Length

28 nucleotides

Bulged bases

4V5G|1|DA|A|1379, 4V5G|1|DA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5G|1|DA|G|1344
4V5G|1|DA|C|1345
4V5G|1|DA|G|1346
4V5G|1|DA|G|1347
4V5G|1|DA|G|1348
4V5G|1|DA|A|1349
4V5G|1|DA|C|1350
4V5G|1|DA|C|1351
4V5G|1|DA|U|1352
4V5G|1|DA|A|1353
4V5G|1|DA|A|1354
4V5G|1|DA|G|1355
*
4V5G|1|DA|C|1376
4V5G|1|DA|G|1377
4V5G|1|DA|A|1378
4V5G|1|DA|A|1379
4V5G|1|DA|G|1380
4V5G|1|DA|G|1381
4V5G|1|DA|G|1382
4V5G|1|DA|C|1383
4V5G|1|DA|A|1384
4V5G|1|DA|G|1385
4V5G|1|DA|C|1386
4V5G|1|DA|C|1387
*
4V5G|1|DA|G|1400
4V5G|1|DA|G|1401
4V5G|1|DA|C|1402
4V5G|1|DA|C|1403

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DD

50S RIBOSOMAL PROTEIN L2

Chain DX

50S RIBOSOMAL PROTEIN L23