J3_4V5J_014
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 4V5J|1|BA|U|272|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5J_014 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.0606
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V5J|1|BA|U|269
4V5J|1|BA|A|270
4V5J|1|BA|A|271
4V5J|1|BA|A|271|||A
4V5J|1|BA|C|271|||B
*
4V5J|1|BA|G|271|||V
4V5J|1|BA|G|271|||W
4V5J|1|BA|G|271|||X
4V5J|1|BA|U|271|||Y
4V5J|1|BA|C|271|||Z
4V5J|1|BA|G|272
4V5J|1|BA|U|272|||A
4V5J|1|BA|G|272|||B
*
4V5J|1|BA|C|366
4V5J|1|BA|G|370
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain BI
- 50S RIBOSOMAL PROTEIN L9
Coloring options: