J3_4V5J_067

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGGAGGUUG*CAUCCUUUAAAGAGUG*CUCACU

Length

31 nucleotides

Bulged bases

4V5J|1|DA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5J|1|DA|A|1054
4V5J|1|DA|G|1055
4V5J|1|DA|G|1056
4V5J|1|DA|A|1057
4V5J|1|DA|G|1058
4V5J|1|DA|G|1059
4V5J|1|DA|U|1060
4V5J|1|DA|U|1061
4V5J|1|DA|G|1062
*
4V5J|1|DA|C|1076
4V5J|1|DA|A|1077
4V5J|1|DA|U|1078
4V5J|1|DA|C|1079
4V5J|1|DA|C|1080
4V5J|1|DA|U|1081
4V5J|1|DA|U|1082
4V5J|1|DA|U|1083
4V5J|1|DA|A|1084
4V5J|1|DA|A|1085
4V5J|1|DA|A|1086
4V5J|1|DA|G|1087
4V5J|1|DA|A|1088
4V5J|1|DA|G|1089
4V5J|1|DA|U|1090
4V5J|1|DA|G|1091
*
4V5J|1|DA|C|1100
4V5J|1|DA|U|1101
4V5J|1|DA|C|1102
4V5J|1|DA|A|1103
4V5J|1|DA|C|1104
4V5J|1|DA|U|1105

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DJ

50S RIBOSOMAL PROTEIN L10

Chain DK

50S RIBOSOMAL PROTEIN L11

Chain DQ

50S RIBOSOMAL PROTEIN L16

Chain DZ

50S RIBOSOMAL PROTEIN L25